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Top: Science: Biology: Bioinformatics: Online_Services: Homology_Detection:

Homology Detection

Categories:

Sites:

» BLAST Open in a new browser window - NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
» ESPript Open in a new browser window - Formating of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry.
» GWBLAST Open in a new browser window - Genome-Wide BLAST search for similarity searching against genes or proteins. Integrated with multiple alignments and phylogenetic tree capabilities.
» GeneMatcher Open in a new browser window - Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
» GeneStream II Open in a new browser window - Sequence comparison and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR.
» HMM library for all proteins of known structure Open in a new browser window - This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assignments
» Interactive Blast Query Open in a new browser window - Utility for online manipulation of Blast results. Results organized in a table format.
» Meta-MEME Open in a new browser window - Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.
» PatternHunter Open in a new browser window - Commercial general homology search software significantly faster than BLAST.
» Sequence Alignment and Modeling System Open in a new browser window - Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.
» The ISREC Group Servers Open in a new browser window - Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
» WU-BLAST Archives Open in a new browser window - Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
» mreps : maximal tandem repeats search Open in a new browser window - Open source tool for identifying serial repeats (tandem repeats) in DNA sequences.


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Last Updated: 2007-04-22 21:18:25


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